species:   Bodot
pid:       PID1124
parent:    Bd-milR7
paralog:   
locus:     MU009149.1:1408902-1409183
matures:   ['UAGGAAUCUUUGAAUUGAAAGGA', 'CGGUCUUCGUUCAAAGAUUCCUAUU']
srr:       SRR8374848
genome:    /Users/jax/+Genomes/Fungal_genomes/Bodot.GCA_011064635.1_ASM1106463v1_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Hu2019-my.SRR8374848.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Hu2019-my.SRR8374848.cram MU009149.1:1408902-1409183

0 out of bounds
3 alignments
3 proper strand
2 stranded perfect matches

       ************************                                                                                                                                                                                                                ***********************************        
GAGUUCGACUUAGGAAUCUUUGAAUUGAAAGGAGGAAAAGCAGCUUGGAGUGUUCUUAAUCCUCACCCUUUGAGAAGCUAGUUGCGAAAAUACAGGGGUUUCUGGGGUUUGGGAGAGCUUGAAGUUCAAAAAUGACGGAGAAAGGAAAGAGUGAUGUUGGAAAUGGCCUUUUUUAUCACCUCAUCAUCGUCAACACAUGCCACACACGCUCACCAAGCGGCUAAAUGUCUAAUUUCUCCCGGUCUUCGUUCAAAGAUUCCUAUUUUUGUUUUUUUGCUCUCG
(((..(((..(((((((((((((((.((..((.((((((((.(((((((((((......((((.(((((...(((((((..(((........))).))))))))))))..))))(((((...))))).....((((((.((...((..(.((((((..((......)).....))))))))).)).)))))).............)))))..)))))).)))..........))))).))..))...)))))))))))))))...........)))..))).
----------UAGGAAUCUUUGAAUUGAAAGGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=23 a=0 c
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGUCUUCGUUCAAAGAUUCCUAUU------------------ l=25 a=0 c*
---------UUAGGAAUCUUUGAAUUGAAAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=22 a=2 ma
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GUCUUCGUUCAAAGAUUCCUAUUUUUGUUUUUU-------- l=33 a=0 ma*

--------------------------------------------------------------------------------------------------------------------------------------ACGGAGAAAGGAAAGAGUGgUGUUG--------------------------------------------------------------------------------------------------------------------------- l=25 a=1 
---------UUAGGAAUCUUUGAAUUGAAAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=22 a=2 (ma)

mb-00010
ax-1001011
ku-01
ss-101111101010
fn-111
